##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index5_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20667670	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.22001977000794	33.0	31.0	34.0	31.0	34.0
2	32.45540527790506	34.0	31.0	34.0	31.0	34.0
3	32.46425417088622	34.0	31.0	34.0	31.0	34.0
4	36.10081073483368	37.0	35.0	37.0	35.0	37.0
5	35.992901909116995	37.0	35.0	37.0	35.0	37.0
6	35.97455934800585	37.0	35.0	37.0	35.0	37.0
7	35.961778710420674	37.0	35.0	37.0	35.0	37.0
8	35.92656796823251	37.0	35.0	37.0	35.0	37.0
9	37.630855631041136	39.0	37.0	39.0	35.0	39.0
10-14	37.87388986760482	39.2	37.2	39.4	35.0	39.4
15-19	38.836714443379435	40.0	38.0	41.0	35.0	41.0
20-24	38.66194496041402	40.0	38.0	41.0	34.2	41.0
25-29	38.33637801455124	40.0	38.0	41.0	34.0	41.0
30-34	38.30492886716306	40.0	38.0	41.0	33.8	41.0
35-39	38.03359280460739	40.0	37.4	41.0	33.0	41.0
40-44	37.949213859133614	40.0	37.0	41.0	33.0	41.0
45-49	37.60543477808577	39.6	36.4	41.0	32.4	41.0
50-54	37.022311513586196	39.0	35.2	40.8	31.2	41.0
55-59	36.353946632590905	38.2	34.8	40.0	30.4	41.0
60-64	35.54772279603845	36.8	34.0	39.8	29.4	41.0
65-69	34.63489131576032	35.6	33.4	39.0	28.4	40.6
70-74	33.56862794886893	35.0	32.6	37.4	26.4	39.6
75-79	32.52335652736859	34.6	31.8	36.2	26.0	38.8
80-84	31.90264128467312	34.6	31.6	35.2	25.2	37.0
85-89	30.698137912981963	34.0	31.0	35.0	21.2	36.0
90	29.686625294481672	34.0	31.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	12.0
12	108.0
13	964.0
14	4099.0
15	10703.0
16	18562.0
17	26984.0
18	34082.0
19	42161.0
20	50906.0
21	60000.0
22	70198.0
23	82889.0
24	101176.0
25	126232.0
26	160814.0
27	207640.0
28	266917.0
29	340567.0
30	429215.0
31	538970.0
32	680619.0
33	883452.0
34	1201005.0
35	1737336.0
36	2717705.0
37	4038296.0
38	4540285.0
39	2266308.0
40	29465.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.916035132726826	12.789774035967188	11.395403709945224	50.89878712136077
2	22.196362009075372	19.143069981942013	34.99320755900748	23.66736044997513
3	25.820191632632028	21.57348651299348	22.95220022382784	29.654121630546648
4	27.857576591846104	27.19776830189373	19.63903526619111	25.305619840069056
5	29.38995485073376	29.65033740866833	21.645781306617724	19.31392643398019
6	24.466981522348675	32.792332178711966	21.739542967349486	21.00114333158987
7	21.557156660620187	19.02584084224298	37.495750609526866	21.921251887609973
8	21.69523221533922	22.390864572542526	29.1535523839891	26.76035082812915
9	21.581310326708333	21.225396960566915	31.657032456972654	25.5362602557521
10-14	24.594243085940505	26.321235049717746	24.729854889302956	24.354666975038793
15-19	24.95728062234398	25.225865324925355	25.17623708913487	24.6406169635958
20-24	24.74200550659078	25.45628632019271	25.508817641357908	24.292890531858603
25-29	24.61590264921707	25.45561932353794	25.46692983805662	24.461548189188367
30-34	24.666688930483925	25.406135719010702	25.393272896972384	24.53390245353298
35-39	24.68203624427836	25.536752408957092	25.344347450523735	24.43686389624081
40-44	24.610156146763412	25.37341623961371	25.527204173642552	24.48922343998032
45-49	24.5705796438253	25.43070113266027	25.432953983176642	24.565765240337782
50-54	24.60272462912284	25.50983844383647	25.462344697345902	24.42509222969479
55-59	24.62187446209981	25.441178677839915	25.42800609581265	24.508940764247622
60-64	24.53309340171867	25.467528826234027	25.535779394314602	24.4635983777327
65-69	24.574138926526334	25.571971501208875	25.494386504098703	24.359503068166084
70-74	24.624301450017246	25.491953788460446	25.43912941326437	24.44461534825794
75-79	24.58978728392765	25.47741575871746	25.487536206268853	24.445260751086046
80-84	24.54073540204192	25.61032949579895	25.4803943489901	24.368540753169032
85-89	24.615244819573295	25.58173879325353	25.40009713799043	24.40291924918275
90	24.357135651172122	25.71439976562105	25.59246368130269	24.336000901904136
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	75.81482225408759
2	45.86372245905051
3	55.47431326317868
4	53.16319643191516
5	48.703881284713944
6	45.46812485393854
7	43.478408548230156
8	48.45558304346837
9	47.11757058246043
10-14	48.948910060979294
15-19	49.59789758593978
20-24	49.03489603844938
25-29	49.07745083840543
30-34	49.20059138401691
35-39	49.11890014051917
40-44	49.09937958674374
45-49	49.13634488416308
50-54	49.02781685881763
55-59	49.13081522634744
60-64	48.99669177945137
65-69	48.93364199469242
70-74	49.06891679827518
75-79	49.03504803501369
80-84	48.909276155210954
85-89	49.01816406875605
90	48.69313655307626
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	2.0
1	3.5
2	4.5
3	2.5
4	3.0
5	5.5
6	7.5
7	12.5
8	18.0
9	27.5
10	35.0
11	56.5
12	106.5
13	195.0
14	328.5
15	525.0
16	921.5
17	1646.5
18	2770.0
19	4802.0
20	6162.0
21	8234.5
22	13533.0
23	21683.5
24	33061.5
25	49156.0
26	71358.5
27	100741.5
28	135222.0
29	175454.5
30	198028.0
31	220657.0
32	267975.5
33	320285.0
34	375597.5
35	429007.0
36	484158.0
37	541476.0
38	588795.5
39	628174.0
40	648117.0
41	660796.5
42	687239.5
43	709660.0
44	720408.0
45	725257.5
46	723610.0
47	715632.0
48	713405.0
49	713154.0
50	711558.0
51	704867.0
52	696260.5
53	685223.0
54	678447.0
55	676414.0
56	665082.0
57	649815.5
58	628695.0
59	602245.5
60	588603.0
61	572291.0
62	538198.5
63	494445.0
64	443114.0
65	392273.5
66	337552.5
67	280639.5
68	228460.0
69	178750.5
70	153546.0
71	131728.5
72	92865.5
73	62610.5
74	38883.5
75	21869.5
76	11567.5
77	5727.0
78	2588.5
79	1035.0
80	585.0
81	416.5
82	185.5
83	96.5
84	55.0
85	32.0
86	22.0
87	18.5
88	13.0
89	5.5
90	2.0
91	3.0
92	2.0
93	0.0
94	0.5
95	0.5
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.1762269283378339
2	0.05266195947583835
3	0.0
4	0.0
5	1.451542433181873E-5
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	9.67694955454582E-7
25-29	8.477007809782138E-4
30-34	0.001715723156020974
35-39	0.0035756328604046807
40-44	0.0030917853826773894
45-49	0.0025150391892264585
50-54	0.012742607173425936
55-59	0.002416334303770091
60-64	1.548311928727331E-5
65-69	6.96740367927299E-5
70-74	0.005198457300702015
75-79	0.0029021171714082913
80-84	6.231955513127508E-4
85-89	7.935098634727572E-4
90	0.0013789653115227794
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.066767E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	51.66414889702322
#Duplication Level	Relative count
1	100.0
2	30.185617405763857
3	15.111841248534995
4	9.306914824349638
5	6.453034689318735
6	4.637930861773633
7	3.645233349026836
8	2.9129811978483207
9	2.319967143815925
10++	25.769065101323264
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4323830	2.6050825	5.3674736	1
CCTGG	4338995	2.5980592	6.1553907	1
GAAGA	4470185	2.5753295	5.0646486	2
CTTCT	4539895	2.5477293	5.585231	1
CTGGA	4208355	2.4640496	8.519219	1
TCCAG	4088825	2.3849275	5.4287643	2
CTCCT	4013930	2.317891	7.000723	1
CTGGG	3807410	2.288495	8.322726	1
CAGGA	3802520	2.2402766	5.381181	1
CTTCA	3894115	2.1989188	5.6499047	1
CTCCA	3778315	2.1954033	7.3830724	1
CCCAG	3655060	2.193749	6.9411044	1
CAGAA	3696290	2.121353	5.0436068	1
CTCTG	3560505	2.0639312	6.3485436	1
CTGGC	3138015	1.8789488	5.212755	1
TGGAA	3271010	1.8728205	5.0005817	2
CTGAA	3279535	1.8705363	5.5197678	1
CTCAG	3022830	1.7631545	5.9569354	1
CTTTG	3045620	1.7157087	5.104326	1
CTGGT	2880960	1.6764143	5.0257173	1
CTTGG	2810615	1.6354809	5.285266	1
>>END_MODULE
